Pursuing a PhD is an exciting intellectual adventure—but it’s also a juggling act of reading, writing, organizing, analyzing, and staying sane. Over time, I’ve discovered a set of tools and apps that support my research, writing, and well-being. In this post, I want to share what’s currently in my digital toolbox and how each tool helps me stay focused, productive, and balanced.
1. Writing and Note-Taking
Scrivener (currently testing my workflow with this app)
When I started the PhD program, I used Microsoft Word to write my thesis. But I quickly realized how difficult it was to navigate long documents and connect ideas effectively.
That’s why I’ve switched to Scrivener for now. Configuring the settings took some effort to ensure the formatting was right, but navigating and organizing my thesis has been much easier since switching. I love its flexibility and how it allows me to organize chapters, sections, and notes in one place.
Obsidian / Notion
This is where I take notes from readings, lectures, and meetings. The ability to link ideas and organize them visually has helped me create meaningful connections in my research.
2. Reference and Knowledge Management
Zotero
An essential tool for managing references, saving articles, and creating citations with ease. I use it to store academic papers and generate bibliographies without stress.
NotebookLM
This has become one of my favorite tools for working with long PDFs and documents. I can upload research articles or lecture notes and ask NotebookLM questions about the content. It’s like having an AI-powered research assistant that helps me analyze, summarize, and extract insights from dense material.
ChatGPT / Perplexity
These tools help me brainstorm, outline ideas, and explore new perspectives on my research topics. ChatGPT clarifies my thinking through guided questions and reflections, while Perplexity is great for quickly summarizing complex subjects or finding academic sources. They’ve both become essential for making progress when I feel stuck or want to explore something from a fresh angle.
Claude / Gamma
For creating presentations and visual storytelling, I’ve been using Claude to help me draft compelling slide content with clarity and structure. I’ll soon be trying Gamma as well, which promises a beautiful and intuitive design experience for modern presentations. These tools help me bring my ideas to life visually for class presentations.
Mapify
Mapify has been a powerful tool for organizing my thinking and planning across different dimensions of my PhD. I use it to create interactive maps that help me visually structure my ideas, understand topics from various courses, and track research themes across time. It’s particularly useful for strategic thinking.
3. Task and Project Management
Google Calendar / Outlook Calendar
My schedule lives here. I block focused work sessions, deadlines, meetings, and even breaks—because rest is also part of the process.
4. Reading and Summarizing
Recall
When I want to extract insights from lectures, interviews, or YouTube videos, I use Recall. It summarizes video content clearly and concisely, allowing me to focus on key points without spending hours rewatching.
Speechify
When I’m tired of staring at a screen or want to absorb readings while walking or doing chores, I turn to Speechify. It turns articles, PDFs, and even my own notes into audio, allowing me to continue learning on the go. It’s a game-changer for multitasking and reducing screen fatigue.
Notta
Notta is a transcription tool I’ve recently added to my workflow. I use it to transcribe classes. Its accuracy and multilingual support make it a great tool especially when I want a clean and editable transcript to reference or quote in my research.
5. Self-Care and Focus
Lifestack
It helps me design my day with intention by tracking habits, managing energy levels, and keeping me aligned with my priorities throughout the day.
Rize
I’ve also been using Rize, an intelligent time-tracking app that gives me detailed feedback on how I spend my time, helping me improve focus and reduce distractions throughout the day.
My PhD journey is supported not just by knowledge and discipline, but by tools that make the process smoother and more enjoyable. These apps help me create structure, reduce overwhelm, and focus on what matters most: learning and contributing something meaningful. If you’re on a similar path, I hope this list helps you discover something useful for your own workflow.